shrikant pawar

https://www.linkedin.com/in/shrikant-pawar-ms-ph-d-5bb37a16/details/skills/ N. Expertise & Bibliometry: Programming Languages (Functional): R Language, Python, OpenACC (for Open Accelerators) CUDA (Compute Unified Device Architecture) implementation for parallel processing on HPC cluster graphics processing units (GPUs) accelerations, Common Gateway Interface (CGI) scripting for web server hosting, Perl, MATHLAB. Programming Languages (OOP): Java, C++. Markup Languages, Front-End Development: HTML, CSS, JavaScript, PHP, JavaScript Object Notation (JSON) usages. Graphics/GPU Processing Languages: OpenGL, WebGL implementations, node.js. Web Frameworks: Angular, flask, Rabbit-mq, Nginx webserver, Jbrowse. Command Line Interface Languages (CLI): bash, csh and tcsh, ksh, sh, windows batch language. IDE: Android Studio, NetBeans. OS: Windows, Unix/Linux, Mac OSx. Databases, Back-End Development and cloud computing: Structured Query Language (SQL), MySQL, MongoDB, AWS, Google Cloud & Colab, Cloud-based learning management system (LMS): Canvas and Moodle, HelioCloud, OneSciencePlace, Tapis v3, Geoweaver. Analysis of next generation sequencing datasets: Trinity de-novo and reference alignments in High Performance Computing (GSU OCTAN, CARINA HPC, Yale Ruddle and Farnham clusters) environment, BLAST, ORF finder, database searches, variant calling, single nucleotide variation (SNV) identification, slurm array jobs, single nucleotide polymorphisims variant calling (SNPs), genome level cluster analysis and protein‐protein interaction analysis, GO enrichment analysis, Apache Taverna, GenePattern, QIAGEN IPA, gene expression analysis using RSEM, HTseq, DEseq and edgeR pipelines, DNA barcoding analysis, executing cluster scripting language scripts [RMS] across HPC clusters (Compound noun titles) (https://campuspress.yale.edu/knightlab/software/rms/) for whole genome and exome alignments, filtering trios for de novo mutations, somatic variant calling of tumor-normal exomes and CNV analysis of exome data. Configuration and management of Lenovo ThinkSystem SR250 rack servers for Claflin University, Department of Computer Science. Intel Microway Xeon + NVIDIA GPU OctoPuter Analysis of Microarray datasets: Agilent & Affymetrix Microarray data processing, Chromatin immunoprecipitation sequencing (CHIP) Seq and CHIP on CHIP analysis with QuEST, MACS2. Protein Modeling and simulation studies, Chemoinformatics: Protein modeling with Autodock, DEVS Java modeling and simulation techniques, protein molecular replacement and refinements using Shelx. Yale Genetics and SEAS certification on machine learning for single cell analysis, (May 2, 2020), conducted by Krishnaswamy lab at Yale University, New Haven, Connecticut, USA. (https://www.krishnaswamylab.org/)^ Bioinformatics software’s: DNA Master, Geneious, Apollo, Agilent Genespring GX, AnnotSV, Qiagen Ingenuity Pathway Analysis, Cytoscape, Gene Mania, CytoHubba, Docker Engine. Structure visualization tools: Molecular Graphics Laboratory (MGL) MGLtool, Pymol and Coot. Android & web application projects: https://github.com/spawar2 https://campuspress.yale.edu/knightlab/software/rms/ https://www.krishnaswamylab.org/ https://www.r-project.org/ https://www.python.org/ https://www.openacc.org/node/10 https://developer.nvidia.com/cuda-zone#:~:text=CUDA%C2%AE%20is%20a%20parallel,harnessing%20the%20power%20of%20GPUs. https://www.perl.org/ https://www.mathworks.com/help/matlab/ref/perl.html https://www.java.com/ https://www.php.net/ https://www.opengl.org/ https://get.webgl.org/ https://auth0.com/blog/using-python-flask-and-angular-to-build-modern-apps-part-1/ https://www.rabbitmq.com/ https://nginx.org/en/ https://jbrowse.org/jb2/ https://developer.android.com/studio https://netbeans.apache.org/front/main/index.html https://www.mysql.com/ https://aws.amazon.com/partners/mongodb/ https://aws.amazon.com/ https://cloud.google.com/colab/docs/introduction https://www.instructure.com/canvas https://moodle.org/ https://heliocloud.org/ https://onescienceplace.org/ https://tapis.readthedocs.io/en/latest/ https://geoweaver.dev/ https://www.genepattern.org/ https://digitalinsights.qiagen.com/products-overview/discovery-insights-portfolio/analysis-and-visualization/qiagen-ipa/ https://htseq.readthedocs.io/ https://www.bioconductor.org/packages/devel/bioc/vignettes/DESeq2/inst/doc/DESeq2.html https://bioconductor.org/packages/release/bioc/html/edgeR.html https://www.google.com/aclk?sa=L&ai=DChsSEwiAsJXN8IWQAxVTCLMAHYAQNEwYACICCAEQAxoCeW0&co=1&ase=2&gclid=EAIaIQobChMIgLCVzfCFkAMVUwizAB2AEDRMEAAYASAAEgISBvD_BwE&cid=CAASN-RoqCpPyqlG_NqzgHsdyU2kq5YEOk0e5ErOhWJy-0VyBmgEPGNqWQNEE_hKDnUe63AM_fWmEpc&cce=2&category=acrcp_v1_32&sig=AOD64_2co-mM1fsITrQqd7PH03PmfoOTOw&q&nis=4&adurl&ved=2ahUKEwib_I3N8IWQAxXRlmoFHSgVNfgQ0Qx6BAgKEAQ https://www.lenovo.com/us/en/p/servers-storage/servers/racks/77xx7srsr25/7y51a08cna https://campuspress.yale.edu/shrikantpawar/files/2025/05/DOD-Server-121x300.png https://www.microway.com/product/numbersmasher-2u-2p-xeon-servers/ https://pypi.org/project/MACS2/ https://autodock.scripps.edu/ https://dev.java/ https://www.claflin-computation.com/lab-journey?pgid=ktmii98q-ab280ed8-f32d-4ceb-8a19-6b779b7c6d0d https://www.geneious.com/ https://www.agilent.com/en/product/software-informatics/genomics-software-informatics/gene-expression/genespring-gx https://lbgi.fr/AnnotSV/ https://cytoscape.org/ https://genemania.org/ https://apps.cytoscape.org/apps/cytohubba http://mgl.scripps.edu/ https://www.pymol.org/ https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/web/docs/coot.html