pyKNEEr
An image analysis workflow for open and reproducible research on femoral knee cartilage
Jupyter Notebook
19
2
timeSavers
Instructions to use and create software tools
Jupyter Notebook
4
0
Serena Bonaretti
Mentor
Rising Codementor
US$15.00
For every 15 mins
ABOUT ME
Senior research scientist | Scientific python
Senior research scientist | Scientific python
I am a research scientist with expertise in Python, Jupyter Notebook, Binder, Pandas, Numpy, several visualization packages (matlplotlib, altair, voila) and medical imaging packages (SimpleITK and ITK).
Since 2019 I am an independent researcher and teacher. I create reproducible workflows and I teach Python. I am also writing a book entitled Learn Python with Jupyter (https://learnpythonwithjupyter.com/). In the past, I worked as a research scientist at Stanford University (2.5 years) and University of California San Francisco (4 years). I have a PhD in Biomedical Engineering and I am specialized in medical image analysis.
Italian, English
Amsterdam (+02:00)
Joined June 2020
EXPERTISE
Scientific Python
4 years experience
13 years experience
4 years experience
4 years experience
4 years experience
ITK/SimpleITK
13 years experience
REVIEWS FROM CLIENTS
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SOCIAL PRESENCE
EMPLOYMENTS
Founder and research scientist
Transparent Musculoskeletal Research
2019-10-01-Present
See my website: https://tmskr.github.io/
See my website: https://tmskr.github.io/
Python
NumPy
Matplotlib
View more
Python
NumPy
Matplotlib
Pandas
View more
Research Scientist
Stanford University
2016-01-01-2018-07-01
Research scientist at the Department of Radiology
Research scientist at the Department of Radiology
Python
NumPy
Matplotlib
View more
Python
NumPy
Matplotlib
Pandas
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Postdoc
University of California, San Francisco
2012-03-01-2015-12-01
Postdoc
Postdoc
MATLAB
MATLAB
PROJECTS
pyKNEErView Project
2019
An image analysis workflow for open and reproducible research on femoral knee cartilage
It is implemented in python with Jupyter notebooks
An image analysis workflow for open and reproducible research on femoral knee cartilage
It is implemented in python with Jupyter notebooks
Python
NumPy
Matplotlib
View more
Python
NumPy
Matplotlib
Pandas
Ipywidgets
binder
View more
More projectView Project
2020
See my major projects here: https://tmskr.github.io/my_work.html
See my major projects here: https://tmskr.github.io/my_work.html
Python
C++
NumPy
View more
Python
C++
NumPy
Pandas
Vtk
Itk
binder
simpleitk
View more