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Daniel Standage
Mentor
Rising Codementor
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ABOUT ME
Bioinformatics scientist with >10 years software engineering experience
Bioinformatics scientist with >10 years software engineering experience
DNA, genes, genomes, and software are my daily bread! I have a Ph.D. in Bioinformatics and Computational Biology, I'm well versed in bioinformatics algorithms and genomics technologies, and I'm passionate about software development. Python when I can, C/C++ when I must!
Hit me up for questions about writing bioinformatics software, troubleshooting bioinformatics tools, or anything related to slicing and dicing data!
Eastern Time (US & Canada) (-04:00)
Joined July 2021
EXPERTISE
13 years experience
Undergraduate, graduate (Ph.D.), and postdoctoral experience with bioinformatics algorithms and tools.
Undergraduate, graduate (Ph.D.), and postdoctoral experience with bioinformatics algorithms and tools.
9 years experience
Python is my primary software engineering stack. I have extensive experience with the pytest testing framework, Pandas for data analytics...
Python is my primary software engineering stack. I have extensive experience with the pytest testing framework, Pandas for data analytics, networkx for graphs, Snakemake for workflows, Jupyter for interactive notebooks, and more!
13 years experience
It ain't always pretty, but sometimes hacking it out with shell commands is the quickest and easiest way to slice and dice data, or to au...
It ain't always pretty, but sometimes hacking it out with shell commands is the quickest and easiest way to slice and dice data, or to automate your workflow.
6 years experience
Perl isn't the poster child for bioinformatics it once was, but plenty of legacy code is still out there. I wrote plenty of Perl scripts/...
Perl isn't the poster child for bioinformatics it once was, but plenty of legacy code is still out there. I wrote plenty of Perl scripts/modules in my day, and have reviewed my fair share of Perl code written by others.
8 years experience
REVIEWS FROM CLIENTS
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SOCIAL PRESENCE
PROJECTS
KevlarView Project
2018
Reference-free variant discovery in large eukaryotic genomes
Reference-free variant discovery in large eukaryotic genomes
Python
C++
Cython
Python
C++
Cython
MicroHapDBView Project
2021
Portable database of microhaplotype marker and allele frequency data
Portable database of microhaplotype marker and allele frequency data
Python
Pandas
Snakemake
Python
Pandas
Snakemake